Optimisation of Algorithms

Pages on Optimisation @ www.catalase.com:

Optimisation to Sequence Alignment

Alignment of sequences of characters to identify common similar patterns is one of the most heavily used algorithms in bioinformatics. This page describes extreme optimisation to this algorithm that allowed comprehensive database searches to be performed on a 16MHz PC.

3D Transform

An article on replacing multiplication by addition in a 68000 based 3D rotation program.

Optimisation Links

Links to other pages on the web that deal with optimisation of algorithms.